Basic Statistics
Measure | Value |
---|---|
Filename | ToxA_R2_S2_L005_R1_001_x.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 500000 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCGAATCTTGTGGAAAGGACGAAACACCGTCCGCCTGAAGTACTGCACCG | 2154 | 0.4308 | No Hit |
TCGAATCTTGTGGAAAGGACGAAACACCGGCAAGTACCTGTCAGACCGCG | 1589 | 0.31779999999999997 | No Hit |
TCGAATCTTGTGGAAAGGACGAAACACCGCTTCAACCAAGTGACGCTACG | 1373 | 0.2746 | No Hit |
TCGAATCTTGTGGAAAGGACGAAACACCGGCGAGGACGACGAGTTCTACG | 1171 | 0.2342 | No Hit |
TCGAATCTTGTGGAAAGGACGAAACACCGTCTTGAACTAGCTGCCACCCG | 896 | 0.1792 | No Hit |
TCGAATCTTGTGGAAAGGACGAAACACCGTCACCTGGGCGTGCGCAGCGG | 861 | 0.1722 | No Hit |
TCGAATCTTGTGGAAAGGACGAAACACCGCGCACACCTGCTTATATACGT | 814 | 0.1628 | No Hit |
TCGAATCTTGTGGAAAGGACGAAACACCGATATCCATGTAGCGACAAGAG | 806 | 0.16119999999999998 | No Hit |
TCGAATCTTGTGGAAAGGACGAAACACCGTGACCGTAGGGATGGCCACTG | 753 | 0.15059999999999998 | No Hit |
TCGAATCTTGTGGAAAGGACGAAACACCGAGCAAAGGTTATTGTTCAGTG | 670 | 0.134 | No Hit |
TCGAATCTTGTGGAAAGGACGAAACACCGGCCCTCTCCGAAGCCGCTCCG | 648 | 0.1296 | No Hit |
TCGAATCTTGTGGAAAGGACGAAACACCGGGCCGCCCATGGATGTAGTCG | 618 | 0.12359999999999999 | No Hit |
TCGAATCTTGTGGAAAGGACGAAACACCGATCCATACAACTGCTCCGCCG | 599 | 0.1198 | No Hit |
TCGAATCTTGTGGAAAGGACGAAACACCGCACTCACAGGCTGCCCAGCCG | 581 | 0.11620000000000001 | No Hit |
TCGAATCTTGTGGAAAGGACGAAACACCGGAAGAAGTCGGCCTCCTCTAG | 568 | 0.1136 | No Hit |
TCGAATCTTGTGGAAAGGACGAAACACCGAAGGGCTTGAGTGTCAGATGT | 526 | 0.1052 | No Hit |
TCGAATCTTGTGGAAAGGACGAAACACCGCAACGGGTTCTCCCGGCTACG | 522 | 0.1044 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGAATC | 47600 | 0.0 | 44.462425 | 1 |
CTTAAGG | 20 | 7.8628527E-4 | 43.9879 | 44 |
AAGTAAA | 25 | 4.446433E-5 | 43.9879 | 32 |
CGGAAAA | 50 | 2.7284841E-11 | 43.9879 | 28 |
GATACGG | 20 | 7.8628527E-4 | 43.9879 | 36 |
CGAACCG | 25 | 4.446433E-5 | 43.9879 | 28 |
CGTATAG | 25 | 4.446433E-5 | 43.9879 | 28 |
CGAGTGG | 40 | 8.3164196E-9 | 43.9879 | 28 |
ACGTTTA | 20 | 7.8628527E-4 | 43.9879 | 30 |
CAACGGA | 25 | 4.446433E-5 | 43.9879 | 30 |
CGCGGGT | 30 | 2.5296195E-6 | 43.9879 | 28 |
CTATATT | 20 | 7.8628527E-4 | 43.9879 | 33 |
GTTTAAA | 20 | 7.8628527E-4 | 43.9879 | 29 |
GTGGGTA | 20 | 7.8628527E-4 | 43.9879 | 29 |
TTAGAGT | 20 | 7.8628527E-4 | 43.9879 | 38 |
TTAGAAC | 35 | 1.447006E-7 | 43.9879 | 36 |
ATAGCGG | 20 | 7.8628527E-4 | 43.9879 | 44 |
AAGACCG | 20 | 7.8628527E-4 | 43.9879 | 44 |
GGATCGG | 25 | 4.446433E-5 | 43.9879 | 44 |
ATTAAGC | 25 | 4.446433E-5 | 43.9879 | 31 |