Basic Statistics
Measure | Value |
---|---|
Filename | Control_R2_S15_L008_R1_001_x.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 500000 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCGAATCTTGTGGAAAGGACGAAACACCGCTGCCTAGCTGCGACGCCATG | 670 | 0.134 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGAATC | 47950 | 0.0 | 45.359646 | 1 |
TCGATCG | 25 | 4.4561722E-5 | 43.9716 | 44 |
TCGTCTA | 25 | 4.4561722E-5 | 43.9716 | 41 |
TTTCGCA | 20 | 7.877217E-4 | 43.971596 | 41 |
AGCCAGG | 20 | 7.877217E-4 | 43.971596 | 44 |
GGATATG | 20 | 7.877217E-4 | 43.971596 | 39 |
TCATCGG | 30 | 2.5360805E-6 | 43.971596 | 44 |
TACCGCA | 20 | 7.877217E-4 | 43.971596 | 38 |
CGGAATA | 35 | 1.4523721E-7 | 43.9672 | 28 |
CGGAAAT | 20 | 7.881098E-4 | 43.9672 | 28 |
CCGGGGT | 95 | 0.0 | 43.9672 | 27 |
CCGGGCT | 150 | 0.0 | 43.9672 | 27 |
CGTATGA | 55 | 1.8189894E-12 | 43.9672 | 28 |
GTGGGCT | 20 | 7.881098E-4 | 43.9672 | 29 |
CGTTAGT | 25 | 4.4588043E-5 | 43.9672 | 28 |
CATAGGA | 25 | 4.4588043E-5 | 43.9672 | 31 |
GGGAACG | 25 | 4.4588043E-5 | 43.9672 | 29 |
CGAATAG | 25 | 4.4588043E-5 | 43.9672 | 28 |
CGGTGGG | 20 | 7.881098E-4 | 43.9672 | 28 |
CGTAAAG | 40 | 8.35098E-9 | 43.9672 | 28 |